PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548842.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 284aa    MW: 32077.7 Da    PI: 9.7617
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548842.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.3e-13105152355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++ErrRR+++ ++f  L +l+P +     kK +Ka++L + ++Y+k+Lq
  XP_010548842.1 105 KDHIIAERRRREKLSQRFIALSTLVPGL-----KKTDKASVLGESIKYLKHLQ 152
                     5699************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.986102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-17106162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10106152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-16107165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-12107156No hitNo description
SMARTSM003536.5E-14108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MENEDFSFMQ QQWRMMNPTE ERNDAFTLPS LPYVPPSSSF GPNMEQLFFS SPSPVKPRSS  60
YTNRVTGLND GFGNLHPKQE NLFRLNPQRD VSGSKNASRG ISQAKDHIIA ERRRREKLSQ  120
RFIALSTLVP GLKKTDKASV LGESIKYLKH LQEKVRFLEG QAIQKTMESV VYVSKSRLSA  180
TAGSEDYEAV AVEEPLPEIE ARFSGRNVMI RIHCERRKGV VETTSAEIER IQLTVINSSV  240
MTFGSNFLHL IIIAEMGMDF SMTAKDVAKS IKSSLEFFMK ANIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110115ERRRRE
2111116RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548842.10.0PREDICTED: transcription factor bHLH25-like
TrEMBLA0A078DL763e-96A0A078DL76_BRANA; BnaC03g45410D protein
STRINGBra013128.1-P2e-94(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-54bHLH family protein